package edu.fau.scanny.r.stromal.model;

import java.io.File;

public class StromalOutput {
	
	private File comparisonPlot;
	private Double lymphSpecificDepletion;
	private Double stromalSpecificEnrichment;
	private Double stromalMskListMean;
	private Double stromalMskListStandDev;
	private Double tissueMskListMean;
	private Double tissueMskListStandDev;
	private File mskPlot;
	private File boxPlotFile;
	private File signalFile;
	private String wholeTissueS;
	private String lymphocyteS;
	private String stromalS;
//	private Signal wholeTissue;
//	private Signal lymphocyte;
//	private Signal stromal;
	private String presentCallPercentS;
	private Double percentLymphoid;
	private String group;

	public File getComparisonPlot() {
		return comparisonPlot;
	}

	public void setComparisonPlot(File comparisonPlot) {
		this.comparisonPlot = comparisonPlot;
	}

	public File getBoxPlotFile() {
		return boxPlotFile;
	}

	public void setBoxPlotFile(File boxPlotFile) {
		this.boxPlotFile = boxPlotFile;
	}

	public String getWholeTissueS() {
		return wholeTissueS;
	}

	public void setWholeTissueS(String wholeTissueS) {
		this.wholeTissueS = wholeTissueS;
	}

	public String getLymphocyteS() {
		return lymphocyteS;
	}

	public void setLymphocyteS(String lymphocyteS) {
		this.lymphocyteS = lymphocyteS;
	}

	public String getStromalS() {
		return stromalS;
	}

	public void setStromalS(String stromalS) {
		this.stromalS = stromalS;
	}

	public File getSignalFile() {
		return signalFile;
	}

	public void setSignalFile(File signalFile) {
		this.signalFile = signalFile;
	}

	public Double getPercentLymphoid() {
		return percentLymphoid;
	}

	public void setPercentLymphoid(Double percentLymphoid) {
		this.percentLymphoid = percentLymphoid;
	}

	public Double getLymphSpecificDepletion() {
		return lymphSpecificDepletion;
	}

	public void setLymphSpecificDepletion(Double lymphSpecificDepletion) {
		this.lymphSpecificDepletion = lymphSpecificDepletion;
	}

	public Double getStromalSpecificEnrichment() {
		return stromalSpecificEnrichment;
	}

	public void setStromalSpecificEnrichment(Double stromalSpecificEnrichment) {
		this.stromalSpecificEnrichment = stromalSpecificEnrichment;
	}

	public Double getStromalMskListMean() {
		return stromalMskListMean;
	}

	public void setStromalMskListMean(Double stromalMskListMean) {
		this.stromalMskListMean = stromalMskListMean;
	}

	public Double getStromalMskListStandDev() {
		return stromalMskListStandDev;
	}

	public void setStromalMskListStandDev(Double stromalMskListStandDev) {
		this.stromalMskListStandDev = stromalMskListStandDev;
	}

	public Double getTissueMskListMean() {
		return tissueMskListMean;
	}

	public void setTissueMskListMean(Double tissueMskListMean) {
		this.tissueMskListMean = tissueMskListMean;
	}

	public Double getTissueMskListStandDev() {
		return tissueMskListStandDev;
	}

	public void setTissueMskListStandDev(Double tissueMskListStandDev) {
		this.tissueMskListStandDev = tissueMskListStandDev;
	}

	public String getPresentCallPercentS() {
		return presentCallPercentS;
	}

	public void setPresentCallPercentS(String presentCallPercentS) {
		this.presentCallPercentS = presentCallPercentS;
	}
	public File getMskPlot() {
		return mskPlot;
	}

	public void setMskPlot(File mskPlot) {
		this.mskPlot = mskPlot;
	}

	public String getGroup() {
		return group;
	}

	public void setGroup(String group) {
		this.group = group;
	}

//	public Signal getWholeTissue() {
//		return wholeTissue;
//	}
//
//	public void setWholeTissue(Signal wholeTissue) {
//		this.wholeTissue = wholeTissue;
//	}
//
//	public Signal getLymphocyte() {
//		return lymphocyte;
//	}
//
//	public void setLymphocyte(Signal lymphocyte) {
//		this.lymphocyte = lymphocyte;
//	}
//
//	public Signal getStromal() {
//		return stromal;
//	}
//
//	public void setStromal(Signal stromal) {
//		this.stromal = stromal;
//	}

}
